Index

Symbols

--additional-logger xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-check-upload command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option --always-include xnat-ingest-check-upload command line option xnat-ingest-upload command line option --avoid-clashes xnat-ingest-associate command line option xnat-ingest-deidentify command line option --check-checksums xnat-ingest-upload command line option --collate-resources xnat-ingest-group command line option --constant-project-id xnat-ingest-assign command line option --copy-mode xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option --datatype xnat-ingest-group command line option --disable-progress xnat-ingest-check-upload command line option --dont-avoid-clashes xnat-ingest-associate command line option xnat-ingest-deidentify command line option --dont-check-checksums xnat-ingest-upload command line option --dont-raise-errors xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option --dont-require-manifest xnat-ingest-associate command line option xnat-ingest-upload command line option --dont-use-curl-jsession xnat-ingest-check-upload command line option xnat-ingest-upload command line option --dont-verify-ssl xnat-ingest-check-upload command line option xnat-ingest-upload command line option --dry-run xnat-ingest-upload command line option --enable-progress xnat-ingest-check-upload command line option --logger xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-check-upload command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option --loop xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option --method xnat-ingest-upload command line option --no-dry-run xnat-ingest-upload command line option

--no-require-manifest xnat-ingest-deidentify command line option --no-spaces-to-underscores xnat-ingest-associate command line option --not-recursive xnat-ingest-group command line option --num-files-per-batch xnat-ingest-upload command line option --password xnat-ingest-check-upload command line option xnat-ingest-upload command line option --path-metadata-regex xnat-ingest-group command line option --processed-label xnat-ingest-group-orthanc command line option --project xnat-ingest-assign command line option --raise-errors xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option --recursive xnat-ingest-group command line option --reid-encrypt-key xnat-ingest-deidentify command line option --require-manifest xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-upload command line option --resource xnat-ingest-group command line option --scan xnat-ingest-assign command line option xnat-ingest-group command line option --session xnat-ingest-assign command line option xnat-ingest-group command line option --spaces-to-underscores xnat-ingest-associate command line option --store-credentials xnat-ingest-check-upload command line option xnat-ingest-upload command line option --subject xnat-ingest-assign command line option --temp-dir xnat-ingest-associate command line option xnat-ingest-check-upload command line option xnat-ingest-upload command line option --to-process-label xnat-ingest-group-orthanc command line option --unlink-source xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option --use-curl-jsession xnat-ingest-check-upload command line option xnat-ingest-upload command line option --user xnat-ingest-check-upload command line option xnat-ingest-upload command line option --verify-ssl xnat-ingest-check-upload command line option xnat-ingest-upload command line option --wait-period xnat-ingest-group command line option xnat-ingest-group-orthanc command line option xnat-ingest-upload command line option -i xnat-ingest-check-upload command line option xnat-ingest-upload command line option

A

assign() (in module xnat_ingest.api) (xnat_ingest.model.session.ImagingSession method)

associate() (in module xnat_ingest.api) associate_files() (xnat_ingest.model.session.ImagingSession method) associated (xnat_ingest.model.scan.ImagingScan attribute)

C

check_upload() (in module xnat_ingest.api)

checksums (xnat_ingest.model.resource.ImagingResource attribute)

D

DATATYPE xnat-ingest-associate command line option

deidentify() (in module xnat_ingest.api) (xnat_ingest.model.session.ImagingSession method)

F

fileset (xnat_ingest.model.resource.ImagingResource attribute)

from_paths() (xnat_ingest.model.session.ImagingSession class method)

G

GLOB xnat-ingest-associate command line option

group() (in module xnat_ingest.api) group_orthanc() (in module xnat_ingest.api)

I

id (xnat_ingest.model.scan.ImagingScan attribute) ID_PATTERN xnat-ingest-associate command line option ImagingResource (class in xnat_ingest.model.resource) ImagingScan (class in xnat_ingest.model.scan) ImagingSession (class in xnat_ingest.model.session)

INPUT_DIR xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-check-upload command line option xnat-ingest-deidentify command line option INPUT_PATHS xnat-ingest-group command line option

L

load() (xnat_ingest.model.resource.ImagingResource class method) (xnat_ingest.model.scan.ImagingScan class method) (xnat_ingest.model.session.ImagingSession class method)

M

metadata (xnat_ingest.model.resource.ImagingResource attribute) (xnat_ingest.model.scan.ImagingScan attribute) (xnat_ingest.model.session.ImagingSession attribute)

N

name (xnat_ingest.model.resource.ImagingResource attribute)

O

OUTPUT_DIR xnat-ingest-assign command line option xnat-ingest-associate command line option xnat-ingest-deidentify command line option xnat-ingest-group command line option xnat-ingest-group-orthanc command line option

P

PASSWORD xnat-ingest-group-orthanc command line option

project_id (xnat_ingest.model.session.ImagingSession attribute)

R

REID_DIR xnat-ingest-deidentify command line option

resources (xnat_ingest.model.scan.ImagingScan attribute) run_uid (xnat_ingest.model.session.ImagingSession attribute)

S

save() (xnat_ingest.model.resource.ImagingResource method) (xnat_ingest.model.scan.ImagingScan method) (xnat_ingest.model.session.ImagingSession method) scan (xnat_ingest.model.resource.ImagingResource attribute) scans (xnat_ingest.model.session.ImagingSession attribute) SERVER xnat-ingest-check-upload command line option xnat-ingest-upload command line option

session_id (xnat_ingest.model.session.ImagingSession attribute) session_resources (xnat_ingest.model.session.ImagingSession attribute) SPEC_DIR xnat-ingest-deidentify command line option STAGED xnat-ingest-upload command line option STORE_DIR xnat-ingest-group-orthanc command line option subject_id (xnat_ingest.model.session.ImagingSession attribute)

T

type (xnat_ingest.model.scan.ImagingScan attribute)

U

uid (xnat_ingest.model.session.ImagingSession attribute) upload() (in module xnat_ingest.api) URL xnat-ingest-group-orthanc command line option

USER xnat-ingest-group-orthanc command line option

X

xnat-ingest-assign command line option --additional-logger --constant-project-id --copy-mode --dont-raise-errors --logger --loop --project --raise-errors --scan --session --subject --unlink-source INPUT_DIR OUTPUT_DIR xnat-ingest-associate command line option --additional-logger --avoid-clashes --copy-mode --dont-avoid-clashes --dont-raise-errors --dont-require-manifest --logger --loop --no-spaces-to-underscores --raise-errors --require-manifest --spaces-to-underscores --temp-dir --unlink-source DATATYPE GLOB ID_PATTERN INPUT_DIR OUTPUT_DIR xnat-ingest-check-upload command line option --additional-logger --always-include --disable-progress --dont-use-curl-jsession --dont-verify-ssl --enable-progress --logger --password --store-credentials --temp-dir --use-curl-jsession --user --verify-ssl -i INPUT_DIR SERVER xnat-ingest-deidentify command line option --additional-logger --avoid-clashes --copy-mode --dont-avoid-clashes --dont-raise-errors --logger --loop --no-require-manifest --raise-errors --reid-encrypt-key --require-manifest --unlink-source INPUT_DIR OUTPUT_DIR REID_DIR SPEC_DIR

xnat-ingest-group command line option --additional-logger --collate-resources --copy-mode --datatype --dont-raise-errors --logger --loop --not-recursive --path-metadata-regex --raise-errors --recursive --resource --scan --session --unlink-source --wait-period INPUT_PATHS OUTPUT_DIR xnat-ingest-group-orthanc command line option --additional-logger --copy-mode --dont-raise-errors --logger --loop --processed-label --raise-errors --to-process-label --unlink-source --wait-period OUTPUT_DIR PASSWORD STORE_DIR URL USER xnat-ingest-upload command line option --additional-logger --always-include --check-checksums --dont-check-checksums --dont-raise-errors --dont-require-manifest --dont-use-curl-jsession --dont-verify-ssl --dry-run --logger --loop --method --no-dry-run --num-files-per-batch --password --raise-errors --require-manifest --store-credentials --temp-dir --use-curl-jsession --user --verify-ssl --wait-period -i SERVER STAGED